In situ Hi-C on non-heat treated S2 cells
(Drosophila Melanogaster) with MboI on chromosome 2R and 2L download from
4DN
portal (Ray J, Munn PR, et al., 2019). This data is the result of the
ImportHiC() function.
Usage
data(HiC_Ctrl.cmx_lst)Format
A a list of ContactMatrix objects. Each element correspond to the interaction matrix of two chromosomes.
Examples
data(HiC_Ctrl.cmx_lst)
HiC_Ctrl.cmx_lst
#> $`2L_2L`
#> class: ContactMatrix
#> dim: 236 236
#> type: dgCMatrix
#> rownames: NULL
#> colnames: NULL
#> metadata(5): name type kind symmetric resolution
#> regions: 236
#>
#> $`2L_2R`
#> class: ContactMatrix
#> dim: 236 253
#> type: dgCMatrix
#> rownames: NULL
#> colnames: NULL
#> metadata(5): name type kind symmetric resolution
#> regions: 489
#>
#> $`2R_2R`
#> class: ContactMatrix
#> dim: 253 253
#> type: dgCMatrix
#> rownames: NULL
#> colnames: NULL
#> metadata(5): name type kind symmetric resolution
#> regions: 253
#>
#> attr(,"resolution")
#> [1] 1e+05
#> attr(,"chromSize")
#> # A tibble: 2 × 3
#> name length dimension
#> <chr> <dbl> <dbl>
#> 1 2L 23513712 236
#> 2 2R 25286936 253
#> attr(,"matricesKind")
#> # A tibble: 3 × 4
#> name type kind symmetric
#> <chr> <chr> <chr> <lgl>
#> 1 2L_2L cis U TRUE
#> 2 2L_2R trans NA FALSE
#> 3 2R_2R cis U TRUE
#> attr(,"mtx")
#> [1] "obs"