get some basic information about your hic file

GetInfo

Usage

GetInfo(file = NULL, printInfos = TRUE, returnInfos = FALSE)

Arguments

file

path to your file.

printInfos

print info on console? (Default: TRUE)

returnInfos

return info? (Default: FALSE)

Value

list of characters if returnInfos is TRUE.

Examples

h5_path <- system.file("extdata",
    "Control_HIC_10k_2L.h5",
    package = "HicAggR", mustWork = TRUE
)
GetInfo(h5_path)
#> file name: Control_HIC_10k_2L.h5
#> file path: /home/runner/work/_temp/Library/HicAggR/extdata/
#> resolution(s): 10000
#> normalization(s): No correction found!
#> unit(s): to be checked
#> seqStyle: Ensembl
#> chromosom(s): 2L
#> chromosom length(s): 23513712